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腾讯登录【文章发表】求臻医学助力合作伙伴开发FLT3-ITD检测框架，有效指导AML预后分层和靶向治疗，检测准确性达99%
| 导读 | 近日，求臻医学生信团队助力合作伙伴设计并实现了一款基于Docker的FLT3-ITD检测框架，该框架能够准确检测FLT3-ITD，检测结果与一代测序结果的一致性高达99%以上，突破了现有NGS方法低估突变频率的核心技术难题。目前，该研究成果已在国际生物信息学领域重要科技期刊Briefings in Bioinformatics上在线发布 |
近日，求臻医学生信团队助力合作伙伴设计并实现了一款基于Docker的FLT3-ITD检测框架，该框架能够准确检测FLT3-ITD，检测结果与一代测序结果的一致性高达99%以上，突破了现有NGS方法低估突变频率的核心技术难题。目前，该研究成果已在国际生物信息学领域重要科技期刊Briefings in Bioinformatics（SCI影响因子：8.99，中科院JCR数学与计算生物学1区Top期刊）上在线发表。此项研究适用于急性髓系白血病（AML）患者，可有效指导AML患者预后分层和临床个性化诊疗。
研究背景
FLT3-ITD是急性髓系白血病的预后不良指标之一，伴有该突变的患者临床上常表现为预后差、复发率高且总生存期短。目前临床上广泛采用PCR和毛细管电泳法检测FLT3-ITD，并通过片段分析对其长度和突变频率进行定量评估。但由于该方法存在操作过程易污染，无法识别突变位置和碱基序列，以及突变峰重叠导致FLT3-ITD个数识别出现偏差等不足，从而无法准确定位和量化FLT3-ITD。
二代测序（NGS）技术的蓬勃发展推动了FLT3-ITD检测软件的研发和应用。基于NGS的检测方法能够检测FLT3-ITD的突变位置、碱基序列、插入长度和突变频率等定量信息，有效地克服了传统检测方法的局限性。然而，基于NGS的检测方法仍存在安装部署复杂、检测结果假阳性较高且低估突变频率等问题。因此，突破以上技术瓶颈，开发基于Docker的FLT3-ITD自动化检测框架具有巨大的临床应用价值。
研究设计
本研究纳入了AML队列中的163例患者，使用求臻医学ChosenHeme®对血液样本进行基因检测。此外，基于二代测序数据模拟软件wgsim生成共计500例FLT3-ITD阳性样本。研究首先对现有NGS检测方法的原理、功能和局限性进行了全面研究，然后分别在模拟数据和真实样本上，围绕定性和定量分析能力、结果可读性以及运行时间，对Pindel、ITDseek、ScanITD、ITDetector、getITD和FLT3_ITD_ext六款代表性软件进行性能评估。
图1. 文章结构框架图
研究结果
基于以上对比分析结果，研究者设计了一款基于Docker的FLT3-ITD检测框架，实现了FLT3-ITD的精准检测，并使检测流程趋于自动化、可定制化以及跨平台可移植，为临床医生和科研人员选择合适的FLT3-ITD检测软件提供了有效的指导，同时进一步助力AML的预后分层和个性化诊疗。
未来，求臻医学将使用自主研发的ChosenHeme®血液系统肿瘤基因检测Panel，持续对大规模AML样本集进行测序，积累大量高通量测序数据，深度挖掘AML患者队列中FLT3-ITD的突变特征。与此同时，还将进一步关注靶向FLT3-ITD药物的筛选和研发，推动靶向治疗的发展进程，为更多的AML患者带来福音。
关于FLT3-ITD
FMS样酪氨酸激酶3（FLT3）基因位于染色体13q12.2，其编码的FLT3蛋白属于III型受体酪氨酸激酶（RTK）家族，可以调节细胞凋亡、增殖及造血干/祖细胞的分化，在造血过程中发挥重要作用。
图2. FLT3蛋白结构
FLT3-ITD，即FLT3基因内部串联重复，常见于FLT3基因的14号和15号外显子，其插入长度为3到几百个碱基对不等，多数情况下以3的倍数出现。每个患者中携带FLT3-ITD突变的个数一般为1-3个，且插入位置多覆盖14号外显子的Y591-Y597区域。FLT3-ITD的突变模式，如突变个数、插入长度以及突变频率等，不仅是AML的预后指标，还是AML风险分层的重要考虑因素，对其治疗方案的选择具有一定指导意义。
图3. FLT3-ITD突变特征
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